Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs12714403 chr2:273070 A/G 1.64E-6 527 3.63 45.93 38.05 KM Plot
KIRC rs12762098 chr10:81923959 G/C 2.06E-6 522 38.83 49.92 3.93 KM Plot
KIRC rs12765412 chr10:81934177 C/T 2.21E-6 520 38.47 50.07 3.93 KM Plot
KIRC rs12770258 chr10:560144 C/G 3.53E-9 512 39.23 38.88 3.67 KM Plot
KIRC rs12777382 chr10:81920710 G/A 2.06E-6 522 38.83 49.92 3.93 KM Plot
KIRC rs12804032 chr11:21111071 A/G 5.95E-5 527 11.73 48.77 38.95 KM Plot
KIRC rs12809493 chr12:29537437 C/T 3.67E-8 519 40.28 39.47 6.07 KM Plot
KIRC rs12810064 chr12:29516215 A/G 6.38E-8 523 40.28 39.47 6.07 KM Plot
KIRC rs12810315 chr12:29516092 G/A 5.8E-8 525 40.57 39.7 6.07 KM Plot
KIRC rs12811201 chr12:29544185 G/A 2.53E-8 517 40.6 39.7 6.07 KM Plot
KIRC rs12811723 chr12:29525390 C/A 5.92E-8 524 40.57 39.47 6.07 KM Plot
KIRC rs12813520 chr12:29525530 T/C 5.92E-8 524 40.57 39.47 6.07 KM Plot
KIRC rs12813731 chr12:29544842 T/C 1.9E-8 514 40.6 39.47 6.07 KM Plot
KIRC rs12813789 chr12:29483082 C/T 6.34E-8 523 40.58 39.47 6.07 KM Plot
KIRC rs12814930 chr12:29434340 C/A 4.63E-8 526 40.8 39.23 6.07 KM Plot